Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015854905.1_cds_XP_016512699.1_25314
CDS Infomation

[gene=LOC107829744] [db_xref=GeneID:107829744] [protein=neutral ceramidase-like] [partial=5'] [protein_id=XP_016512699.1] [location=join(<1272..1326,1427..1548,2589..2705,4589..4649,7277..7538,9008..9216,11215..11520,12046..12304,12840..13098,13356..13481,13612..13675,13886..14052,14773..15363)] [gbkey=CDS]
Sequence

ATATCCAGATTAAATCTTGAGTACAAAGATTATTGGAGACAGACAGTTTCAAAAGGGAAT
AAGGTTGTCCAAACATGGCCTGCAGCATTGGGCCCAGGATTTGCTACTGGAACTACTGAT
AGGCCTGGTGTTTTTGGTTTCCAGCAAGGCGATACCGGGGTCAGGATCATTTTTCTGGTG
CGAGCCCGCAGAAGCGAGCGGGGGATTGCAAATGCGAGATTGGAGGAGCTGGGCATAAGG
CGCATGTGCGATGAAGTTCACGCACCTGCGATGGTCGCGGAAGAGAGGGCGCAGATTATT
GTAAACTTTGATTCTAGACCGGTTGTAGATGCTCATGACTTAGTGACACCCCGATGTTGT
TCGATAATTAGAAGTGTCAATGGGGAATACTTGATAGGAGTTGGAAGTTATGACATGACA
GGACCAGCTGCTCAAGTGAACATGATGGGTTACGGTAATTTTGATCAAGTTACTGGCGGT
ATACATTTTAGGTTAAGAGCTAGGACTTTCATTGTTGCTGAAAGTTCAAAAGGTCCGAGG
TTTGCTTTTGTCAATCTTGATGCAGGGATGGCTTCACAACTTGTGACAATTAAGGTACTT
GAGAGACTAAAATTAAGGTATGGAAATTTATACAGTGAAGAAAATATTGCAATAAGTGGG
ACACATACTCATGCTGGTCCAGGAGGTTACTTGCAATATGTGACCTATACTGTAACTTCA
CTTGGCTTTGTTCCTCAGTCATTTGAGGCCATTGTTACTGCTATTGAACACAGCATTGTC
CAAGCTCATGACAATCTAAAGCCTGGTTCCATCTTTATCAACAAAGGGGATCTAGAGAAT
GCAGGTATAAACAGGAGTCCAAGTGCATATATATTCAACCCTAAAGAAGAGAGGTCCAAA
TATGTTAACAATGTTGATACTCTAATGACCCTATTGAAATTTGTGGATGGAGAGACTGGA
AAAAGTGTTGGTGCATTCAGCTGGTTTGCAACACATGGAACTTCAATGAGCAGAGACAAC
AAACTCATCAGTGGAGATAACAAGGGTGCAGCTGCTAGGTTCTTTGAGGACTGGTTTGCT
TCTCAGGAGAAAAATTCCTCTACAAATTCTACCACTTACTCTAAGGTGTTAGGTAGCAAC
CAAGCCTTGTTCTATAAAGCATCTAAAATCAAGCCCACAGGAGGAAAAACTTGTGCAAAC
ACAACAAGCCAAGGGTTTAAGGTGAGGAAGAACAAAGAATTGAAATTTGTAGGAGCATTT
TGCCAATCAAATGTTGGAGATGTCAGCCCAAATGTGCGTGGAGCATTTTGCATTGATAGT
GGATTACCTTGTGATTTTAATCACTCTTCTTGTCATGGCAATGACCAACTTTGTGTGGGC
CGTGGGCCTGGATATCCAGATGAAATCTTGAGTACAAAGATTATTGGAGAGAGACAGTTT
CAAAAGGCTGTTGAGCTTTTCACTTCTGCTAAACAAGAATTGACAGGGAAGATTGATTAT
CGCCACGTGTATCTGAACTTTACAAATATTAAAGTTCAATTAGAAGGGAATAAGGTTGTC
CAAACATGCCCTGCAGCATTGGGCCCAGGATTTGCTGCTGGAACTACTGATGGGCCTGGT
GTTTTTGGTTTCCAGCAAGGTGATACCGAGATAAATCCATTTTGGAAGAAGCTAAGAGAT
GTGTTAAGAGAACCAAGCCCATATCAAGTGGGCTGTCAAAAGCCCAAAACTGTTTTGCTG
GATACCGGAGAGATGTTCTGGCCCTATCCATGGGCGCCAGCAATACTTCCAATTCAAATT
ATTAGGCTGGGAAGTCTCATCATTCTCTCTGTGCCAGGAGAATTTACAACAATGGCTGGT
CGTCGATTAAGAGAAGCAGTGAAAGAAACACTAATAAGCAGTGGAAATGGCGAATTTGAC
GACGAAAATGTTGTCATAGCAGGCCTAACCAACGCTTACTCACAGTATATATCAACTTTT
GAAGAATACGAGCAACAAAGATATGAGGCTGCATCTACACTATATGGTCCCCATACATTA
TCAGCATATATTCAAGAATTCGAGAAGTTAGCTGAATCTATGGCAAAAGGAGAACAAATT
CCTAAAGGACCTTCACCTCCAAATCTTTTGTCAATTCAACTTAGTCTACTACCAAATCCT
ACGGGTGACTCACCTCCACAAGGCATAAATTTTGGTGATATTAAACAAGACATAAATGTA
CCAAAATCAGGAACATTTAAAAAGGGTGACAAAGCAATTGCTACATTCTGGAGTGCAAAT
CCAAGATATGACTTACTTACTGAAGGCACATTTGCTGTAGTAGAAATGCTACAAGGCAAA
AGATGGATACCTACATATGACGACGACGATTTTTGCTTGATCTTTAAATGGCAAGCAGAA
AATAGTACGAGTGTGGCTGCTGCTGCAAATGCTACTGCTAATGTGAATAGTTATGGTTAT
GCTACACTTGAATGGGAAGTACCAGACGAGGCTAATCTTGGCGTTTATCGCTTAAGGCAT
TTTGGATCAACAAAGAAAACGAAAGAATCACCAAACTTGTATTATACTGGTGCATCTAGT
GCTTTTACTGTGTCTTAG

Peptide Sequence

PEP ID

XP_016512699.1
PEP Infomation

PREDICTED: neutral ceramidase-like, partial [Nicotiana tabacum]
Sequence

ISRLNLEYKDYWRQTVSKGNKVVQTWPAALGPGFATGTTDRPGVFGFQQGDTGVRIIFLV
RARRSERGIANARLEELGIRRMCDEVHAPAMVAEERAQIIVNFDSRPVVDAHDLVTPRCC
SIIRSVNGEYLIGVGSYDMTGPAAQVNMMGYGNFDQVTGGIHFRLRARTFIVAESSKGPR
FAFVNLDAGMASQLVTIKVLERLKLRYGNLYSEENIAISGTHTHAGPGGYLQYVTYTVTS
LGFVPQSFEAIVTAIEHSIVQAHDNLKPGSIFINKGDLENAGINRSPSAYIFNPKEERSK
YVNNVDTLMTLLKFVDGETGKSVGAFSWFATHGTSMSRDNKLISGDNKGAAARFFEDWFA
SQEKNSSTNSTTYSKVLGSNQALFYKASKIKPTGGKTCANTTSQGFKVRKNKELKFVGAF
CQSNVGDVSPNVRGAFCIDSGLPCDFNHSSCHGNDQLCVGRGPGYPDEILSTKIIGERQF
QKAVELFTSAKQELTGKIDYRHVYLNFTNIKVQLEGNKVVQTCPAALGPGFAAGTTDGPG
VFGFQQGDTEINPFWKKLRDVLREPSPYQVGCQKPKTVLLDTGEMFWPYPWAPAILPIQI
IRLGSLIILSVPGEFTTMAGRRLREAVKETLISSGNGEFDDENVVIAGLTNAYSQYISTF
EEYEQQRYEAASTLYGPHTLSAYIQEFEKLAESMAKGEQIPKGPSPPNLLSIQLSLLPNP
TGDSPPQGINFGDIKQDINVPKSGTFKKGDKAIATFWSANPRYDLLTEGTFAVVEMLQGK
RWIPTYDDDDFCLIFKWQAENSTSVAAAANATANVNSYGYATLEWEVPDEANLGVYRLRH
FGSTKKTKESPNLYYTGASSAFTVS

Transcript Sequence

Gene sequence data has not been registered.